1
é? ?y/+E7
ByZHAOYangguo,email:sunshine.zhao@yahoo.com.cn
YVéù¥sa1?16SrDNA? ¥é? Phyligenetictree ?y?¨
NJ(Neighbor-joining)E÷?7OM1 ?ZE ?? yb
[-?''o ?á ì[phylip?¥èq1 è a üyé? ?¥''V?#?NZ
E???ZE?1ˉ?¨ s??vK?b?Mega4.0(freeofcharge,
http://www.megasoftware.net/index.html)DD??á ì|[Nèq1y é?"d?a ?¥
ys?ó<vD?[úùb
èq/??
Mega4.0http://www.megasoftware.net/index.html
Treeview:http://taxonomy.zoology.gla.ac.uk/rod/treeview.html
? ¥? ?#M ?? ¥¤
|X?¤¥16SrDNA? ??8? a????fastaì Tib?B?.txtóq
?b?/ ? U
&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·
>Eu-b1
AGAGTTTGATCCTGGCTCAgGATGAACGCTGGCGGCGTGCTTAACACATGCAA
GTCGAACgCGAAAGGGACTTCGGTCCTGAGTAAAGTGGCGCACGGGTGAGTA
ACGCGTAGATAACCTGTCTTTGTGTCTGGAATAATACTTCGAAAGGGGTACTAA
TACCGGATAACCTTGCTTTTCACAAGTTATGCAAGCAAAGGTGGCCTCTGATAC
AAGCTACTGCATGAAGAGGGGTCTGCGTACCATTAGCTAGTAGGTGGGGTAATG
GCCTACCTAGGCGACGATGGTTAGCGGGTCTGAGAGGATGATCCGCCACACTG
GCACTGGAACACGGGCCAGACTCCTACGGGAGGCAGCAGTGAGGAATATTGC
GCAATGGGGGCAACCCTGACGCAGCGACGCCGCGTGAGTGAGGAAGGCCTTC
GGGTCGTAAAGCTCTGTCAAGAGGAAAGAAGTGCATAATGGTTAATACCTGTTA
TGTTTGACGGTACCTCTAAAGGAAGCACCGGCTAACTCCGTGCCAGCAGCCGC
GGTAA
>Eu-b2
AGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAA
GTCGAGCGGATGAGAAGAGCTTGCTCTTCGATTCAGCGGCGGACGGGTGAGTA
ATACCTAGGAATCTGCCTGGTAGTGGGGGACAACGTTTCGAAAGGAACGCTAA
TACCGCATACGTCCTACGGGAGAAAGCAGGGGACCTTCGGGCCTTGCGCTATC
.&(" .PMFDVMBS&WPMVUJPOBSZ(FOFUJDT"OBMZTJT
5IFTPGUXBSFJTBOJOUFHSBUFEUPPMGPSBVUPNBUJDBOENBOVBMTFRVFODF
BMJHONFOU JOGFSSJOHQIZMPHFOFUJDUSFFT NJOJOHXFCCBTFEEBUBCBTFT
FTUJNBUJOHSBUFTPGNPMFDVMBSFWPMVUJPO BOEUFTUJOHFWPMVUJPOBSZ
IZQPUIFTFT
2
AGATGAGCCTAGGTCGGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGCT
ACGATCCGTAACTGGTCTGAGAGGATGATCAGTCACATTGGAACTGAGACACG
GTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGAAA
GCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGGTCTTCGGATTGTAAAGCAC
TTTAAGTTGGGAGGAAGGGCATTAACCTAATACGTTAGTGTTTTGACGTTACCG
ACAGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAA
&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·&·
YVGenbank http://www.ncbi.nlm.nih.gov/blast/?¥Blastn_?KM ?? GenBank
?/? I? ê4Nucleotide-nucleotideBLAST(blastn)b|
?? TL? {? ?
?/m
?Blast¤??/2T
3
4
? ? M ??vl|M ??Kv¥? // ?? ??? -Z¥ ?¤/
ê4fastaì Ti// ?De SóqbB??B?óq] HF ? I? N
á ìF v?? )?
>Eu-b1
AGAGTTTGATCCTGGCTCAgGATGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAAC
gCGAAAGGGACTTCGGTCCTGAGTAAAGTGGCGCACGGGTGAGTAACGCGTAGATAACC
TGTCTTTGTGTCTGGAATAATACTTCGAAAGGGGTACTAATACCGGATAACCTTGCTTTTC
ACAAGTTATGCAAGCAAAGGTGGCCTCTGATACAAGCTACTGCATGAAGAGGGGTCTGC
GTACCATTAGCTAGTAGGTGGGGTAATGGCCTACCTAGGCGACGATGGTTAGCGGGTCTG
AGAGGATGATCCGCCACACTGGCACTGGAACACGGGCCAGACTCCTACGGGAGGCAGC
AGTGAGGAATATTGCGCAATGGGGGCAACCCTGACGCAGCGACGCCGCGTGAGTGAGG
AAGGCCTTCGGGTCGTAAAGCTCTGTCAAGAGGAAAGAAGTGCATAATGGTTAATACCT
GTTATGTTTGACGGTACCTCTAAAGGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGT
AA
>gi|45238864|gb|AY548775.1|Desulfobulbussp.RPf35L1716SribosomalRNAgenegene,partial
sequence
TTGATCCTGGCTCAGAACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGCG
AAAGGGACTTCGGTCCTGAGTAAAGTGGCGCACGGGTGAGTAACGCGTAGATAACCTG
TCTTCATGTCTGGAATAATACGCCGAAAGGGGTACTAATACCGGATATTCTTGCTTTTC
ATAAGTTATGCAAGCAAAGGTGGCCTCTGCATATGCTACTGCATGAAGAGGGGTCTGC
GTACCATTAGCTAGTAGGTGGGGTAATGGCCTACCTAGGCGACGATGGTTAGCGGGTC
TGAGAGGATGATCCGCCACACTGGCACTGGAACACGGGCCAGACTCCTACGGGAGGC
AGCAGTGAGGAATATTGCGCAATGGGGGAAACCCTGACGCAGCGACGCCGCGTGAGT
GAGGAAGGCCTTCGGGTCGTAAAGCTCTGTCAAGAGGAAAGAAGTGTACAATGGCTA
ATACCTGTTGTATTTGACGGTACCTCTAAAGGAAGCACCGGCTAACTCCGTGCCAGCA
GCCGCGGTAATACGGAGGGTGCAAGCGTTGTTCGGAATCACTGGGCGTAAAGGGCGCG
TAGGCGGCTTGGTAAGTCAGATGTGAAAGCCCACGGCTTAACTGTGGAAGTGCATTTG
AAACTGTCAGGCTTGAGTACCAGAGGGGAAAGTGGAATTCCCGGTGTAGAGGTGAAAT
TCGTAGATATCGGGAGGAATACCGGTGGCGAAGGCGACTTTCTGGCTGGATACTGACG
CTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCTGT
AAACGATGTGAACTAGATGCAGGGGGTGTTGATCCCTTCTGTGTCGCAGCTAACGCAT
TAAGTTCACCGCCTGGGGAGTACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGG
GCCCGCACAAGCGGTGGAGTATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCT
GGTCTTGACATCCCGGAAATCTTTTGGAAACAAGAGAGTGCTTCCATTCGGAAGAATC
TGGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCC
CGCAACGAGCGCAACCCTTGCCTTTAGTTGCCAGCAGTTCGGCTGGGCACTCTAAAGG
GACTGCCGGTGTTAAACCGGAGGAAGGTGGGGATGACGTCAAGTCCTCATGGCCTTTA
TGACCAGGGCTACACACGTACTACAATGGCCGATACAAAGGGCAGCGACACTGCGAG
GTGGAGCCAATCCCATAAAATCGGTCTCAGTCCGGATTGGAGTCTGCAACTCGACTCC
ATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGG
GCCTTGTACACACCGCCCGTCACACCACGGGAGTCGGTTGTACCAGAAGCAGTTGAGC
TAACCGCAAGGGGGCAGGCTGCCAAGGTATGGCTGGTAACTGGGGTGAAGTCGTAAC
AAGGTAACCGTA
>Eu-b2
5
AGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAG
CGGATGAGAAGAGCTTGCTCTTCGATTCAGCGGCGGACGGGTGAGTAATACCTAGGAAT
CTGCCTGGTAGTGGGGGACAACGTTTCGAAAGGAACGCTAATACCGCATACGTCCTACG
GGAGAAAGCAGGGGACCTTCGGGCCTTGCGCTATCAGATGAGCCTAGGTCGGATTAGCT
AGTTGGTGAGGTAATGGCTCACCAAGGCTACGATCCGTAACTGGTCTGAGAGGATGATCA
GTCACATTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATT
GGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGGTCTTCGGATT
GTAAAGCACTTTAAGTTGGGAGGAAGGGCATTAACCTAATACGTTAGTGTTTTGACGTTA
CCGACAGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAA
>gi|62465604|gb|AY972175.1|PseudomonasputidastrainP1916SribosomalRNAgene,partial
sequence
CCTGTTTTGCATGCCGTCCCAAGCGGTCACTTAATGCGTTAGCTGCGCCACTAAAATCTC
AAGGATTCCAACGGCTAGTTGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCT
GTTTGCTCCCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGTGGTCGCCTTCGCC
ACTGGTGTTCCTTCCTATATCTACGCATTTCACCGCTACACAGGAAATTCCACCACCCTCT
ACCGTACTCTAGCTTGCCAGTTTTGGATGCAGTTCCCAGGTTGAGCCCGGGGCTTTCACA
TCCAACTTAACAAACCACCTACGCGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCA
CCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCTGTCGGTAACG
TCAAAACACTAACGTATTAGGTTAATGCCCTTCCTCCCAACTTAAAGTGCTTTACAATCC
GAAGACCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATT
CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCAT
CCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT
CCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGA
CGTATGCGGTATTAGCGTTCCTTTCGAAACGTTGTCCCCCACTACCAGGCAGATTCCTAG
GCATTACTCACCCGTCCGCCGCTGAATCGAAGAGCAAGCTCTTCTCATCCGCTCGACTTG
CATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCAGGATCAAACTCTGTTGCTAAA
AAAAATTCCCGGA
>E.coli-M25588,? I?
AAATTGAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAA
GTCGAACGGTAACAGCAGAAGGGCTTGCTGCTTTTGACGCTGGACGGCGAGTGTGTAA
TGTCTGGGAAACTGCCTGGGGGGAGATGATAACACTTGGAAACGGTAGCTAATACGTGC
ATAATGTCGCAAGACCGAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGCCCAGA
TGGGATTAGGGGTAGCTAGTAACGAGTGGCTCACCTAGGCGACGATTCCAGCTGGTCTG
AGAGGGATGACCAGCACCACTGGAACTGAGACACGGTCCAGACTCCTACGGGGGCAGC
AGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGTGCCGTATGAAGGAA
GCCTTCGGGTTGTGAAGGGAGTAAAGTCTAATACTTTGCTCATTGTTACCCGACGCAGC
GAAGAAGCCACGTACTTTCAGCGAGAGAAGGGGGGGTGGCTAACTCCGTGCCAGCAGC
CGCGGTAATACGAGGTTAATCGCAAGCGTGGGCGGAATTACTGTAAAGCACGAGCGCCT
GGTTTGTTAAGTCAGATGTGAAATCCCCGGGCCTAACCCTGGGAACTGCATCTGATACTG
GCAAGCTTGTAGGTCTCGGAGAGGTAGAATTCCAGTAGAGATCTGGGGAATACCGGTGG
CGGAAGCCCCCCTGGCGGACTGACGAAAGCTCAGGTGTGCGGGGGCATACTCCGCCGG
TAGTCCACGTAAACGATGTCGTGGGGTGACTTGCCCCTTGAGGCGTGGCCTTCGAGGCG
CTAACGTTAAGTCGCCTGACCCGGGGGGGTACGCCGCAAGGTTAAAACTCAAATCGAAT
TGGGGGCCCGGAGCACAAGACGCATGATGTGCGTTTAATTCGCAACGAAGAACCTTACC
TGGTCTTGACCATCACGGAAGTGTTTTCAGAGATGAGAATGTGCTTCCGGGAACCGAGA
CAGCTGCATGGCTGTCAGGTCGTGTTGTGTTGCGAAATGGGTCCCGTTAAGTTGCCTGC
6
AACGAGCAACCCTTATCCTTTGTTGCCAGCGGGAACTCAAAGAGAGACTGCCAGCCGT
CCGTGGATTAAACGAGGGGGGGAAGTGGGGATGACGTCAAGTCATCATGGCCCCCTTCA
CGACCAGGGCACACACTGTGCTACAATGGCGCATCACAAAGAGAGCGACTCCCGCGAG
AGCAAGCGGATCTCATAAAGTCGTGCGTAGTCTGAGGTCCGGATTGCTAACCGACTCCA
TGAAGTCGGAATCGCTAGTGTAATCGGATCCAGAATGCACCGGTGAATACGTTCCCGGG
CCTTGTACACACGCCCCGTCACACCATGGGGTGGAGGTGACTGTGGGTTGATATTCGTC
CAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCTTACCACTTTGTCGTAACAAGGTAA
CCGTAGGGGAACCTGCGGTTGGATCACCTCCTTA
é? ?y#?N
u 7èq.FHB ?/m ? U
n5A?¤¥? é? ?èq"? $MVTUBM8 ?[ V°¤YV.FHBé?
? ¥ b
ê4"MJHONFOU?"MJHONFOU&YQMPSFS$-645"- |D?¤¥''BTUBì T¥? °¤T
Lé? $SM$ $USM7 |¤¥? ió''óq?a ?Z1GBT u 7b?/
m ? Ub
7
8
? óqu 7a2T?/m
°¤ê4"MJHONFOU"JHOCZ$MVTUBM8 ?/m ? U
9
2T?/m ? U
YV??
Z bì[#DTIJGUo¥8? P¨??
? ? i?NFT?
NFHóq?TFRVFODFNFHb
10
í?NFHB S? ?|D?i¥TFRVFODFNFHu 7?/m ? Ub
????ê41IZMPHFOZ#PPUTUSBQ5FTUPG1IZMPHFOZ/FJHICPS+PJOJOH??9 V
[°¤?¨1IZMPHFOZ$POTUSVDU1IZMPHFOZ/FJHICPS+PJOJOH ?{#PPUTSBQ?N ?
/m ? Ub
11
? 1p V[÷?#PPUTUSBQ×ˉQ ?[# ?? ?b? úá ì|?1Qb
12
?$PNQVUF ? y ?ü ?¥7O?{μA3¥|? q V[?M ?¥?]A UZ Tb
13
Eu-b1
gi|45238864|gb|AY548775.1|Desulfobul...
Eu-b2
E.coli-M25588
gi|62465604|gb|AY972175.1|Pseudomona...
??é? ?m?¥sO q??7O?s=??3?? ?[yp?¨ J¥Z T YV
QIPUPTIPQ9FsO q#~?=?
á ì|YV?èq??¥é? ? ][-1IZMJQèq??¥é? ?é?1 '' àμ t
vM? í? ? ^Bá¥?Bê4?]?á ?M? 7O ??÷F ?4
/m ^?¨1IZMJQ??¥é? ??n--?''b
??é? ?yèq ???ê4?ú$<W¤ s¥èqé??m?"?
?^$|a Vb
|
|