常用生物学网站收藏

 

1、这是一个基因组信息网站

http://img.jgi./cgi-bin/w/main.cgi

 

2、 这是功能基因信息网站

http://fungene.cme./index.spr

3、

网上生物信息学教程

EMBL biocomputing tutorials
http://www.bio./Embnetut/Gcg/index.html

Plant genome dababase tutorial
http://www.nal./pgdic


生物信息学机构

NCBI
http://www.ncbi.nlm./

International Nucleotide Sequence Database Collaboration.
http://www.ncbi.nlm./collab/

EBI
http://www./

USDA
http://www.nal./

Sanger Centre
http://genomic./

北京大学生物信息学中心
http://www.cbi.pku.edu.cn

  
  

核苷酸数据库

GenBank
http://www.ncbi.nlm./

dbEST
http://www.ncbi.nlm./dbEST/index.html

dbSTS
http://www.ncbi.nlm./dbSTS/index.html

dbGSS
http://www.ncbi.nlm./dbGSS/index.html

Genome (NCBI)
http://www.ncbi.nlm./entrez/query.fcgi?db=Genome

dbSNP
http://www.ncbi.nlm./SNP/

HTGS
http://www.ncbi.nlm./HTGS/

UniGene
http://www.ncbi.nlm./UniGene/

EMBL核苷酸数据库      
http://www./embl

Genome (EBI)
http://www./genomes/

向EMBL数据库提交序列
http://www./embl/Submission/webin.html

DDBJ    
http://www.ddbj./

Plant R gene database
http://www./rgenes



启动子数据库

Eukaryotic promoter database
http://www.epd.

http://www.genome./dbget/dbget2.html


  
转录因子数据库
  
FRANSFAC
http://transfac.

ooTFD
http://www.

  
基因分类数据库
  
Gene Ontology (GO)
http://www.


蛋白质数据库
  
SWISS-PROT或TrEMBL      
http://www./swissprot/

http://www./sprot/

PIR
http://www-nbrf./pir/

PRF      
http://www.prf./

PDBSTR
_bfind?pdbstr-todayProsite   
http://www./sprot/prosite.html


结构数据库

PDB      
http://www./pdbhttp://www.genome./dbget-bin/www

http://www.

NDB     
http://ndbserver./NDB/ndb.html

http://ndbserver./

DNA-Binding Protein Database
http://ndbserver./NDB/structure-finder/dnabind/index.html

NMR Nucleic Acids Database
http://ndbserver./NDB/structure-finder/nmr/index.html

Protein Plus Database
http://ndbserver./NDB/structure-finder/protein/index.html

Swiss 3Dimage    
http://www./sw3d/

SCOP   
http://scop.mrc-lmb./scop/

CATH   
http://www.biochem./bsm/cath/


酶、代谢和调控路径数据库

KEGG
http://www.genome./kegg/

Enzyme Nomenclature Database      
http://expasy./sprot/enzyme.html

Protein Kinase Resource (PKR)
http://www./kinases/

LIGAND     
http://www.genome./dbget/ligand.html

WIT      
http://www.cme./WIT/

EcoCyc
http://ecocyc.PangeaSystems.com/ecocyc/

UM-BBD     
http://www.labmed./umbbd/

多种代谢路径数据库
http://www./stc-95/ResTools/biotools/biotools8.html

基因调控路径数据库(TRANSPATH)
http://transfac.


基因组数据库

禾本科比较基因组
http://www.

GrainGene
http://www.

Botanical Databases
http://www./botanicaldatabase.htm

Botanical Data
http://www./calflora/batanical.html

日本水稻基因组 (RGP)
http://rgp.dna.affrc.

水稻物理图谱
http://www.genome./projects/rice/fpc

http://www.genome.

华大水稻基因组框架图
http://www.

欧洲水稻测序（第12染色体）
http://www.genoscope.

Maize genome
http://www.agron.

Barley genome
http://www.css./Research/barley/nabgmp.htm

Forage grasses genomes
http://forages./

http://www.forages.css./Topics/Species/Grasses/

Triticum genomes
http://wheat.pw./index.shtml

Arabidopsis genome
http://www.

SoyBase
http://129.186.26.94

Alfalfa genome
http://www.alfalfa.

Cotton genome
http://cottongenomecenter.

Glycine max genome
http://www.zmdb./PlantGDB/glycine_max.html

http://www.zmdb./PlantGDB

C. elegans genome
http://www.

藻类（Chlamydomonas）基因组
http://www.biology./chlamy_genome

粘菌（Dictyostelium）基因组
http://dictygenome.bcm.

Animal genomes (ArkDB)
http://www.

FlyBase
http://flybase.bio./.bin/fbidq.html?FBgn0003075

Mouse Genome Informatics
http://www.informatics./bin/query_accession?id=MGI:97555

Saccharomyces Genome Database
http://genome-www./cgi-bin/dbrun/SacchDB?find+Locus+%22PGK1%22

多种基因组数据库
http://www.hgmp./GenomeWeb



文献数据库

PubMed
http://www.ncbi.nlm./PubMed/

OMIM
http://www.ncbi.nlm./Omim/

Agricola
http://www.nal./ag98/

Rice Genetics Newsletter
http://www./newsletters/rice_genetics

Proceedings of the National Academy of Sciences USA (PNAS)
http://intl.


关键词为基础的数据库检索

Entrez   
http://www.ncbi.nlm./Entrez/

Entrez Nucleotide Sequence Search
http://www.ncbi.nlm./Entrez/nucleotide.html

Entrez Protein Sequence Search
http://www.ncbi.nlm./Entrez/protein.html

Batch Entrez
http://www.ncbi.nlm./Entrez/batch.html

Sequence Retrieval System, India
http://bioinfo.:80/srs5/

Sequence Retrieval System, Singapore      
http://www.bic.:80/srs5/

Sequence Retrieval System, US
http://iubio.bio.:80/srs/srsc

Sequence Retrieval System, UK
http://srs./

GetEntry Nucleotide & Protein Sequence Search
http://ftp2.ddbj.:8000/getstart-e.html

Database Search with Key Words  
http://ftp2.ddbj.:8080/dbsearch-e-new.html

DBGET/LinkDB
http://www.genome./dbget/dbget2.html


序列为基础的数据库检索

BLAST
http://www.ncbi.nlm./BLAST/

FASTA
http://www./fasta33/index.html

BLITZ   
http://www2./bicsw/

SSearch
http://www2.igh./bin/ssearch-guess.cgi

Electronic PCR
http://www.ncbi.nlm./STS/

Proteome analysis
http://www./proteome/


多序列分析

Clustal multiple sequence alignment
http://searchlauncher.bcm./multi-align/multi-align.html

BCM
http://searchlauncher.bcm./

EBI ClustalW analysis
http://www.


系谱分析

PAUP   
http://onyx./PAUP/

EBI ClustalW analysis
http://www.

GCG package     
http://www./

PHYLIP
http://evolution.genetics./phylip.html

MEGA/METREE
http://www.bio./imeg

Hennig86      
http://www./~mes/hennig/software.html

GAMBIT
http://www.lifesci./mcdbio/Faculty/Lake/Research/Programs/

MacClade    
http://phylogeny./macclade/macclade.html

Phylogenetic analysis
http://www./stc-95/ResTools/biotools/biotools2.html

ClustalX
ftp://ftp-igbmc.u-strasbg.fr/pub/ClustalX

MEGA
http://www.


基因结构预测分析

GENSCAN
http://genes./GENSCAN.html

http://bioweb./seqanal/interfaces/genscan-simple.html

http://bioweb.

GeneFinder
http://genomic./gf/gf.shtml

http://www./nucleo.html

Gene Feature Searches      
http://dot.imgen.bcm.:9331/

Grail      
http://compbio./Grail-1.3/

GrailEXP
http://grail.lsd./grailexp/

GeneMark
http://opal.biology./GeneMark/eukhmm.cgi

http://genemark.biology./GeneMark/hmmchoice.html

Veil
http://www.cs./labs/compbio/veil.html

AAT      
http://genome.cs./aat.html

GENEID
http://www./GeneIdentification/Geneid/geneid_input.html

Genlang
http://cbil.humgen./~sdong/genlang_home.html

GeneParser
http://beagle./~eesnyder/GeneParser.html

Glimmer
http://www.cs./labs/compbio/glimmer.html

MZEF   
http://www./genefinder

Procrustes    
http://www-hto./software/procrustes/


基因分类

GO Annotator
http://udgenome.ags./gofigure


蛋白质结构预测分析

Expasy  
http://www./

CBS
http://www.cbs.

Predicting protein secondary structure     
http://dot.imgen.bcm.:9331/pssprediction/pssp.html

Predicting protein 3D Structures     
http://dove./3D/

Predicting protein structures
http://dot.imgen.bcm.:9331/seq-search/struc-predict.html


其它分析工具和软件

Putative DNA Sequencing Errors Check   
http://www.bork./Frame/

MatInspector
http://www./cgi-bin/matsearch.pl

FastM   
http://www./cgi-bin/fastm.pl

Web Signal Scan
http://www.dna.affrc./htdocs/sigscan/signal.html

BCM Search Launcher      
http://dot.imgen.bcm.:9331/seq-util/seq-util.html

Webcutter    
http://www./cutter/cut2.html

Translate DNA to protein   
http://www./tools/dna.html

ABIM   
http://www-biol./english/logligne.html

sequence motifs:

Pfam     
http://www./Pfam/

http://pfam./

ProDom
http://protein.toulouse./prodom.html

PRINTS
http://www.biochem./bsm/dbbrowser/PRINTS/


其它

多种数据库、分析工具和生物信息学机构
http://www./stc-95/Restools/biotools

多种数据库和分析工具
http://www./Tools/

Comparative sequence analysis
http://www.bork./


功能基因组分析

Transcription profiling technologies
http://www.ncbi.nlm./ncicgap/expression_tech_info.html

Protocols for cDNA array technology  
http://cmgm./pbrown/array.html

Data management and analysis of gene expression arrays
http://www.nhgri./DIR/LCG/15k/HTML/

Examples of commercially available filter arrays:

GeneFiltersTM (Research Genetics)    
http://www.

Gene Discovery Arrays (Genome Systems)      
http://www.

AtlasTM Arrays (CLONTECH)    
http://www.

转载自：http://hi.baidu.com/yokoto2009/blog/item/8d0abe88d94577b90f244483.html

 

3、你用得着的五个功能强大的（论文写作以及专业英语）翻译网站

 

新年第一帖，我把自己搜集的几个功能非常强大的学术翻译网站分享给大家：

1）句库
网址：
http://www.jukuu.com/
翻译的非常好，基本上都能找到自己所需的，同时也可以发音，这有利于
提高自己的专业英语听力！

举例：
翻译 first principles
http://www.jukuu.com/search.php?q=first+principles

在第4个清楚的给出了”第一原理“的解释！

2）词博
网址：
http://www./
翻译的很杂，可以供多种选择；而且可以发音，这一点感觉很好！

举例：
翻译 first principles
http://www./search.php?dictkeyword=first+principles
没有找到确切的”第一原理“的翻译，但是其他词汇的翻译还好！

3）句译
网址：
http://www./viewPage.php
翻译的很好，基本你都可以在他的翻译中找到合适的！

举例：
翻译 first principles
http://www./viewPage.php（这个要自己输入firt principle)
翻译结果非常好！它给出10个例句，结果又8个符合我们的要求，而且
给出的例句非常有用，完全是文献里摘出来的！！！

微生物科普及教程网站

 

1、  微生物的世界http://microbiology./colony/

2、  http://microbiology./colony/[/url]

2、中国科普博览——微生物馆http://www./gb/lives/microbe/microbe_basic/

3、微生物界http://www.sw.pte./weishengwu/62、微生物大世界http://kepu./jiaomu1.htm

4、星光网——临床医学常见真菌图谱http://www./partner/njczw/jltp/zj/zj.htm

5、中教育新网——微生物学教程http://ced./Special/Subject/CZSW/SWTS/WSWXJC/6、上海第二医科大学微生物教研室http://lib./micro/

7、武汉大学微生物学专题教学网站http://202.114.65.51/fzjx/wsw/main.htm

8、华南师范大学微生物教学网站http://sky./life/teac ... icro/info_index.asp

9、西北农林科技大学——微生物教学网站http://netc./courseware/wsw/yldh.htm

10、天津医科大学——医学微生物学http://202.113.49.22/home.files/microbiology/xijunxue/index.htm

11、微生物资源在线http://xuequanhong./

12、中华基因网——微生物检验产品http://www./ad/millipore/007.htm

13、兽医微生物学http://www./jiaowuchu/jingpinkecheng/weishwu/