|
非常感谢北京大学卢欣辰童鞋的精彩总结和分享。掌声鼓励！点赞点赞！独乐乐不如众乐乐，大家一起学习才是快乐的哦！更更重要的是，点击本文中链接可以下载各路大咖在2018代谢组学年会讲座中的PPT。内容涉及xcms使用教程，xcms for MS2 处理，PhenoMeNal，多元统计分析和MetaboAnalyst的讲义。有没有很赞！！！ omicsPie就喜欢把好货干货分享给大家。也希望各位组学同仁多多投稿，多多互动，我们共同学习，共同成长。 PS. 关注组学派的小伙伴都知道我们有QQ群和博客。精彩的PPT讲义我们都会分享在QQ群共享文件和博客里面。转发评论点赞打赏，客官，你们自己看着办啊！ ” (1) Updated user interface of XCMS for MS data representation and LC-MS data pre processing Presenter: Johannes Rainer (Senior Researcher, Eurac Research, Italy) 内容提要：基于R的XCMS参数设置基本流程，以full scan的MS信息处理为主，强调不要迷信默认值。 Slides link: https://github.com/jotsetung/metabolomics2018/blob/master/xcms-preprocessing-ioslides.pdf <<W3-1 xcms data preprocessing.pdf>> Github scripts link: https://github.com/jotsetung/metabolomics2018 (2) Analysis of MS2 data (DDA, DIA) with XCMS3 Presenter: Michael Witting (Postdoctoral Fellow / Assistant Professor, Helmholtz Zentrum Muchen, Germany) 内容提要：用xcms3处理质谱二级MS2数据 Data available : https://github.com/michaelwitting/metabolomics2018 Slides link: https://github.com/jotsetung/metabolomics2018/blob/master/xcms-preprocessing-ioslides.pdf <<W3-2 xcms for MS2.pdf>> (3) Application of XCMS in Metabolomics Galaxy Workflow Environments 内容提要：Workflow4metabolomics，整合了genomics等。 Website: workflow4metabolomics.org (ask for free account) Account: secole1 or secole2 pwd: Inra.0618 · All public W4M tools are distributed · Dev: github.com/workflow4metabolomics · Wrappers: on main Galaxy ToolShed toolshed.g2.bx.psu.edu/groups#/175812cd7caaf439 · VM: with the most common W4M tools workflow4metabolomics.org/virtual-environments · Docker/Docker: A Galaxv Flavor · Questions? come to poster 283 @workflow4metabo @yguitton44 (4) Metaboflow 内容提要：一方面介绍基于Galaxy应用 Website: https://www.dev./metabolights/labs/login Any public Galaxy instances can be integrated Export Metabolights data directly into a galaxy history Poster: https://drive.google.com/drive/folders/1nvslitk4v82vToYVBMM-2XraldtrXmwq 另一方面介绍多元数据处理 massPix -Publication: massPix: an R package for annotation and interpretation of mass spectrometry imaging data for lipidomics -R package https://github.com/hallz/massPix -Galaxy tool: https://github.com/wanchanglin/massPix (5) PhenoMeNal Cloud Research Environment (CRE) Github & link: https://github.com/pcm32/metabolomics-workflows-course http:///SF8Mqk Advanced Multivariate Statistical Methods for Metabolomic Data Analysis (1) Overview of popular multivariate methods Presenter: Min Zhang (Professor, Purdue University, USA) (2) Introduce SUR and POCRE Presenter: Dabao Zhang (Assistant Professor, Purdue University, USA) 内容提要：介绍以下方法 PCA - Principal Component Analysis 无监督 PCR - Principal Component Regression 无监督，将Y和X主成分回归 PLS - Partial Least Squares 有监督，构造主成分时考虑了Y SUR - Seemingly Unrelated Regression POCRE - Penalized Orthogonal Components Regression
Slides link: http://www.stat./~zhangdb/packages/POCRE/pocreworkshop.pdf POCRE package link: http://www.stat./~zhangdb/packages/POCRE/ <<W6 Multivariate statistical methods.pdf>> 内容提要：和GNPS有关，MS2LDA，以UCSD为代表 Website: https://gnps./ProteoSAFe/static/gnps-splash.jsp Presenter: David Wishart (Professor, University of Alberta, Canada); Jianguo Xia (Assistant Professor, McGill University, Canada) 内容提要：介绍了MetaboAnalyst 4.0基本工作流程，详见ppt和教材 Website: http://www./ http://www./faces/docs/Tutorial.xhtml <<W12 MetaboAnalyst4.ppt>> <<W12 CPBI_MetaboAnalyst_2018_clean_final.pdf>> Key resources: Self-Assessments and Planning Tools: · ImaginePhD: www.imaginephd.com · AAAS MyIDP: myidp.sciencecareers.org · Doug's Guides: www.dougsguides.com Informational Interviews: · Branching Point: www.branchingpoints.com Tools for Capturing Your Skills: careercenter.umich.edu/article/phd-transferable-skills jobsontoast.com/the-20-skills-that-make-you-totally-employable |
|
|
来自： Jessiee_ > 《omicspie》
