六年前还在上海工作的时候，机缘巧合接触了使用R语言的shiny体系搭建网页工具的技术，就一直身体力行的在我们生物信息学圈子里面推广它。自己一个人能做的很有限，很庆幸这些年有各式各样的小伙伴加入我们《生信技能树》小圈子，一起建设shiny知识体系。最近有空，就安排实习生整理了一下各个公众号关于R语言的shiny体系搭建网页工具的教程，供大家系统性学习！
一、入门资源 🚴 二、进阶资源 🚗 三、UI模板 🪵 四、UI组件 🎨 五、部署经验 ☁️ 六、辅助工具 🔧 七、学无止境 📖 八、行业案例 🎮
一、入门资源 🚴在造汽车之前，造辆自行车玩玩 有成就感的入门，为接下来枯燥无味的进阶积累一点点动力 快速上手 The written Shiny tutorial https://shiny./tutorial/#written-tutorials 理解原理 课件 https://github.com/rstudio-education/shiny.-tutorial 视频 https://shiny./tutorial/#video-tutorials 临摹案例 挑感兴趣的或者与自己项目相关的细看，套用 https://shiny./gallery/
二、进阶资源 🚗准备开始造汽车了 趁着入门刚做完有一种啥都能轻而易举掌握的自信，乘胜追击 Rstudio的shiny文档 层次分明，步骤清晰 https://shiny./articles/  image-20210318172549965有效的使用模块化 https://rpodcast./rsconf-2019
golem框架（基于Shiny - Modularizing Shiny app code） https://github.com/ThinkR-open/golem 视频讲座 https:///post/episode-2-golem/
实践教学 https:///ultimate-guide-r-shiny-app-dashboards-2021 R Shiny {golem} – Development to Production – Overview | R-bloggers A Complete Dashboard Project in R Shiny App | by Lasha Gochiashvili | Towards Data Science
三、UI模板 🪵一个合适项目的模板事半功倍 dashboard http://rstudio./shinydashboard/
复杂度低 历史最久，应用最广 shinydashboardPlus https://github.com/RinteRface/shinydashboardPlus
复杂度低 bs4Dash https://github.com/RinteRface/bs4Dash/ 复杂度中等 支持Bootstrap 4 shinyMobile https://github.com/RinteRface/shinyMobile/
复杂度高 flexdashboard http://rmarkdown./flexdashboard
复杂度高 argonDash https://github.com/RinteRface/argonDash
复杂度中等 支持bootstrap4 shinymaterial https://github.com/ericrayanderson/shinymaterial
复杂度中等 基于谷歌框架 semantic.dashboard https://github.com/Appsilon/shiny.semantic
复杂度低 基于Fomantic UI dashboardthemes https://github.com/nik01010/dashboardthemes
复杂度低 增强dashboard的自定义
四、UI组件 🎨shiny的配套设施 DT 一个表格 https://rstudio./DT/ 一个图标 Icons | Font Awesome iconfont-阿里巴巴矢量图标库 自动化画图主题 Unified and Automatic Theming of ggplot2, lattice, and base R Graphics · thematic 交互式图 Create Interactive Graphs with Echarts JavaScript Version 5 · echarts4r An R package for interactive visualisations · g2r UI界面输入markdown文本 jienagu/noteMD: Print text from shiny ui (support markdown syntax) to pdf or word report 主题设置教程 Styling Shiny & R Markdown with bslib & thematic 不用dashboard的情况下设置shiny和Rmarkdown的主题 Custom Bootstrap Sass Themes for shiny and rmarkdown · bslib 用dashboard的情况下设置shiny的主题 Fresh themes · fresh 支持js shinyjs R package | by Dean Attali | Overview - JohnCoene/waiter: 🕰️ Loading screens for Shiny
- Busy Indicator for Shiny Applications · shinybusy
- daattali/shinycssloaders: ⌛ Add loading animations to a Shiny output while it's recalculating
- emitanaka/shinycustomloader: Add a custom loader for R shiny
五、部署经验 ☁️无论好坏，都要上线 Shiny-server Download Shiny Server - RStudio Docker Deploy your RShiny App Locally with Docker An open-source solution to deploy enterprise-level R Shiny applications | by Mingchu Xu | Towards Data Science
六、辅助工具 🔧展示反应过程 Reactivity Visualizer for shiny · reactlog 展示使用记录 dreamRs/shinylogs: Logs for Shiny apps Packrat: Reproducible package management for R Appsilon/shiny.i18n: Shiny applications internationalisation made easy 工欲善其事，必先利其器 anthonynorth/rscodeio: An RStudio theme inspired by Visual Studio Code.
七、学无止境 📖纸上得来终觉浅，绝知此事要躬行 一些文章和书 他们也许因为软件版本的迭代，在操作环节有一点点过时 在亚马逊服务器上部署 DS4B 202A-R: Expert Shiny Developer with AWS | Business Science 一个github上例举各类shiny资源的列表 grabear/awesome-rshiny: An awesome R-shiny list! nanxstats/awesome-shiny-extensions: 🐝 Awesome R packages that offer extended UI or server components for the R web framework Shiny 一个各种shiny开发者视频讲座 Shiny Developer Series 一个shiny例子集合 dreamRs shiny gallery js在shiny中的运用 JavaScript 4 Shiny - Field Notes 没有shiny的shiny Shiny without Shiny: RTutor in RStudio’s new Visual Markdown Mode | R-bloggers 出色的UI设计 Welcome | Outstanding User Interfaces with Shiny How to write a useful htmlwidgets in R: tips and walk-through a real example 什么是模块化 A beginner's guide to Shiny modules | Emily Riederer
资源背后的机构和开发者，都可以看看，他们的网站，个人Twitter之类的，寻宝哦。 八、行业案例 🎮CIPR: a web-based R/shiny app and R package to annotate cell clusters in single cell RNA sequencing experiments - PubMed A biologist-friendly interactive visualization platform for analyzing and Exploring expression profile data generated by microarray, RNA-seq or mass spectrometry shinyapps.dreamrs.fr/esquisse/ timevis - An R package for creating timeline visualizations https://gallery./genome_browser/ jokergoo/InteractiveComplexHeatmap: Make Interactive Complex Heatmaps venyao/shinyCircos: an R/shiny application for creation of Circos plot interactively https://appforiarteam./noteMD_shiny_demo/ shinyGEO - a web-based application for analyzing gene expression omnibus datasets | shinyGEO 一个访问量高达 1300 万的 shiny 应用的诞生故事
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