前面给打大家安利了一篇2021年新鲜出炉的综述:Nature Review|从基因表达解读细胞间的相互作用和交流。 今天给大家汇总一下这篇综述里面列举出的几个目前用的比较多的,也是学术界比较认可的研究细胞通讯的工具。 1.CellTalker 编程语言:R 软件网址: https://github.com/arc85/celltalker 文章网址: https://www./science/article/pii/S1074761319304959 2.iTALK 编程语言:R 软件网址: https://github.com/Coolgenome/iTALK 文章网址: https:///10.1101/507871 3.CellChat 编程语言:R and Web interface 软件网址: https://github.com/sqjin/CellChat 文章网址: https://www./content/10.1101/2020.07.21.214387v1 4.CellPhoneDB 编程语言:Python and Web interface 软件网址: https://github.com/Teichlab/cellphonedb 文章网址: https://www./articles/s41586-018-0698-6 5.Giotto 编程语言:R 软件网址: https://github.com/RubD/Giotto 文章网址: https://www./content/10.1101/701680v3 6.ICELLNET 编程语言:R 软件网址: https://github.com/soumelis-lab/ICELLNET 文章网址: https://www./content/10.1101/2020.03.05.976878v1 7.NicheNet 编程语言:R 软件网址: https://github.com/saeyslab/nichenetr 文章网址: https://www./articles/s41592-019-0667-5 8.SoptSC 编程语言:MATLAB and R 软件网址: https://github.com/WangShuxiong/SoptSC 文章网址: https://academic./nar/article/47/11/e66/5421812 9.scTensor 编程语言:R 软件网址: https://github.com/rikenbit/scTensor 文章网址: https://www./content/10.1101/566182v1 为了方便大家交流学习,共同进步,我特地创建了微信交流群 |
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