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盘点 | CNGBdb科研支撑成果汇【更新至20210611】

 尐尐呅 2022-06-09 发布于湖北

CNGBdb下属的CNSA板块不仅是数据管理助手,还是文章发表助手,截至2021年6月11日,CNSA已支持论文发表262篇,发表期刊142种,包括The Lancet、Nature、Science、Cell等。

2019

CNGBdb科研支撑成果汇【更新至20191231】

2020

CNGBdb科研支撑成果汇【更新至20201231】

2021

IF ≥20

1

Zheng C, Hu Y, Sakurai M, et al. Cell Competition Constitutes a Barrier for Interspecies Chimerism[J]. Nature, 2021: 1-8.

IF:42.778

CNSA编号:CNP0000803

2

Zhou Y, Shearwin-Whyatt L, Li J, et al. Platypus and echidna genomes reveal mammalian biology and evolution[J]. Nature, 2021: 1-7.

IF:42.778

CNSA编号:CNP0000697,CNP0000779, CNP0000130

3

Yang C, Zhou Y, Marcus S, et al. Evolutionary and biomedical insights from a marmoset diploid genome assembly[J]. Nature, 2021: 1-9.

IF:42.778

CNSA编号:CNP0001310,CNP0001311

4

Sun Y, Wu L, Zhong Y, et al. Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma[J]. Cell, 2021, 184(2): 404-421. e16.

IF:38.637

CNSA编号:CNP0000650

5

Bi X, Wang K, Yang L, et al. Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes. Cell. 2021 Feb 3:S0092-8674(21)00089-1. 

IF:38.637

CNSA编号:CNP0000841

6

Wei T, Van Treuren R, Liu X, et al. Whole-genome resequencing of 445 Lactuca accessions reveals the domestication history of cultivated lettuce[J]. Nature Genetics, 2021: 1-9.

IF:27.603

CNSA编号:CNP0000335

10 ≤ IF < 20

7

Jie Z, Yu X, Liu Y, et al. The baseline gut microbiota directs dieting-induced weight loss trajectories[J]. Gastroenterology, 2021.

IF:17.373    

CNSA编号:CNP0001582

8

Chen K, Sun J, Zhao H, et al. Non-invasive lung cancer diagnosis and prognosis based on multi-analyte liquid biopsy[J]. Molecular cancer, 2021, 20(1): 1-7.

IF:15.302   

CNSA编号:CNP0001236

9

Zhu, F., Ju, Y., Wang, W. et al. Metagenome-wide association of gut microbiome features for schizophrenia. Nat Commun 11, 1612 (2020).

IF:12.121   

CNSA编号:CNP0000119

10

Schrader L, Pan H, Bollazzi M, et al. Relaxed selection underlies genome erosion in socially parasitic ant species[J]. Nature communications, 2021, 12(1): 1-13.

IF:12.121   

CNSA编号:CNP0000530,CNP0000905

11

Li Z, Xia J, Jiang L, et al. Characterization of the human skin resistome and identification of two microbiota cutotypes[J]. Microbiome, 2021, 9(1): 1-18.

IF:11.607   

CNSA编号:CNP0000635

12

Cheng P, Huang Y, Lv Y, et al. The American paddlefish genome provides novel insights into chromosomal evolution and bone mineralization in early vertebrates[J]. Molecular Biology and Evolution, 2020.

IF:11.062

CNSA编号:CNP0000867

13

Ge D, Feijó A, Wen Z, et al. Demographic history and genomic response to environmental changes in a rapid radiation of wild rats[J]. Molecular Biology and Evolution, 2021.

IF:11.062

CNSA编号:CNP0001167

14

Chen C, Li R, Sun J, et al. Noninvasive prenatal testing of α-thalassemia and β-thalassemia through population-based parental haplotyping[J]. Genome medicine, 2021, 13(1): 1-9.

IF:10.675

CNSA编号:CNP0000644

15

Wang Y, Wang D, Zhang L, et al. Intra-host variation and evolutionary dynamics of SARS-CoV-2 populations in COVID-19 patients[J]. Genome medicine, 2021, 13(1): 1-13.

IF:10.675

CNSA编号:CNP0000997,CNP0001004

IF <10

16

Guang X, Lan T, Wan Q H, et al. Chromosome-scale genomes provide new insights into subspecies divergence and evolutionary characteristics of the giant panda[J]. Science Bulletin, 2021.

IF:9.511  

CNSA编号:CNP0000785 

17

Zhu J, Chen F, Luo L, et al. Single-cell atlas of domestic pig cerebral cortex and hypothalamus[J]. Science Bulletin, 2021.

IF:9.511  

CNSA编号:CNP0000686

18

Ding R, Liu S, Wang S, et al. Single-cell transcriptome analysis of the heterogeneous effects of differential expression of tumor PD-L1 on responding TCR-T cells[J]. Theranostics, 2021, 11(10): 4957.

IF:8.579 

CNSA编号:CNP0001109

19

Sun C, Bai Y, Chen D, et al. Accurate classification of COVID‐19 patients with different severity via machine learning[J]. Clinical and Translational Medicine, 2021, 11(3).

IF:7.919 

CNSA编号:CNP0001126

20

Liang H, Li F, Qiao S, et al. Whole‐genome sequencing of cell‐free DNA yields genome‐wide read distribution patterns to track tissue of origin in cancer patients[J]. Clinical and translational medicine, 2020, 10(6): e177.

IF:7.919 

CNSA编号:CNP0000680

21

Ma Y, Zhao X, Chen X, et al. Therapeutic drug monitoring of docetaxel by pharmacokinetics and pharmacogenetics: A randomized clinical trial of AUC‐guided dosing in nonsmall cell lung cancer[J]. Clinical and translational medicine, 2021, 11(4).

IF:7.919 

CNSA编号:CNP0001146

22

Liu X, Song Z, Li Y, et al. Integrated genetic analyses revealed novel human longevity loci and reduced risks of multiple diseases in a cohort study of 15,651 Chinese individuals[J]. Aging cell, 2021: e13323.

IF:7.238

CNSA编号:CNP0000792

23

Zhang H, Xu H K, Zhang S F, et al. Metaproteomics reveals the molecular mechanism underlying bloom maintenance of a marine dinoflagellate under low ambient CO2 and inorganic nutrients[J]. Science of The Total Environment, 2021, 768: 144515.

IF:6.551

CNSA编号:CNP0000232

24

Nie M, Du L, Ren W, et al. Genome-wide CRISPR screens reveal synthetic lethal interaction between CREBBP and EP300 in diffuse large B-cell lymphoma[J]. Cell Death & Disease, 2021, 12(5): 1-11.

IF:6.304

CNSA编号:CNP0001595

25

Liu T, Li J, Yu L, et al. Cross-species single-cell transcriptomic analysis reveals pre-gastrulation developmental differences among pigs, monkeys, and humans[J]. Cell discovery, 2021, 7(1): 1-17.

IF:6.255

CNSA编号:CNP0000872

26

Liu X, Tang S, Zhong H, et al. A genome-wide association study for gut metagenome in Chinese adults illuminates complex diseases[J]. Cell discovery, 2021, 7(1): 1-15.

IF:6.255

CNSA编号:CNP0000289

27

Zhao Y, Gongsang Q, Ji J, et al. Characterizing dynamic changes of plasma cell-free Echinococcus granulosus DNA before and after cystic echinococcosis treatment initiation[J]. Genomics, 2021, 113(2): 576-582.

IF:6.205

CNSA编号:CNP0001188

28

Wang P, Zhou G, Jian J, et al. Whole‐genome assembly and resequencing reveal genomic imprint and key genes of rapid domestication in narrow‐leafed lupin[J]. The Plant Journal, 2020.

IF:6.141

CNSA编号:CNP0001034

29

Jin S, Bian C, Jiang S, et al. A chromosome-level genome assembly of the oriental river prawn, Macrobrachium nipponense[J]. GigaScience, 2021, 10(1): giaa160.

IF:5.993

CNSA编号:CNP0001186

30

Dong S, Liu M, Liu Y, et al. The genome of Magnolia biondii Pamp. provides insights into the evolution of Magnoliales and biosynthesis of terpenoids[J]. Horticulture research, 2021, 8(1): 1-13.

IF:5.404

CNSA编号:CNP0000884

31

Li W, Qu N, Li J K, et al. Evaluation of the Genetic Variation Spectrum Related to Corneal Dystrophy in a Large Cohort[J]. Frontiers in cell and developmental biology, 2021, 9.

IF:5.201

CNSA编号:CNP0000503

32

Wei X, Li H, Guo Y, et al. An ATAC-seq Dataset Uncovers the Regulatory Landscape During Axolotl Limb Regeneration[J]. Frontiers in cell and developmental biology, 2021, 9: 611.

IF:5.201

CNSA编号:CNP0001445

33

Sun C, Zhang K, Yue J, et al. Deconstructing transcriptional variations and their effects on immunomodulatory function among human mesenchymal stromal cells. Stem Cell Res Ther. 2021 Jan 9;12(1):53. 

IF:5.116  

CNSA编号:CNP0000966

34

B, Jixing Zhong A , et al. "Single cell brain atlas of Parkinson's disease mouse model." Journal of Genetics and Genomics(2021).

IF:5.065  

CNSA编号:CNP0000892

35

Sun C, Wang H, Ma Q, et al. Time-course single-cell RNA sequencing reveals transcriptional dynamics and heterogeneity of limbal stem cells derived from human pluripotent stem cells. Cell Biosci. 2021 Jan 23;11(1):24.

IF:5.026  

CNSA编号:CNP0001218

36

Pei X, Cheng H, Shao D, et al. Treatment patterns and survival of patients with advanced non-small cell lung cancer guided by comprehensive genomic profiling: Real-world single-institute study in China[J]. Frontiers in oncology, 2021, 11: 2.

IF:4.848  

CNSA编号:CNP0001436

37

Zhidong Zhang, Guilin Liu, Yao Chen, et al. Comparison of different sequencing strategies for assembling chromosome-level genomes of extremophiles with variable GC content[J]. iScience(2021).

IF:4.447

CNSA编号:CNP0001196

38

Zhang Y, Gao H, Li H, et al.The White-Spotted Bamboo Shark Genome Reveals Chromosome Rearrangements and Fast-Evolving Immune Genes of Cartilaginous Fish. iScience. 2020 Nov 2;23(11):101754. 

IF:4.447

CNSA编号:CNP0000101

39

Hao S, Han K, Meng L,  et al. African Arowana Genome Provides Insights on Ancient Teleost Evolution. iScience. 2020 Oct 9;23(11):101662. 

IF:4.447

CNSA编号:CNP0001313

409

Liu X, Du Z R, Wang X, et al. Colonic Dopaminergic Neurons Changed Reversely With Those in the Midbrain via Gut Microbiota-Mediated Autophagy in a Chronic Parkinson’s Disease Mice Model[J]. Frontiers in aging neuroscience, 2021, 13.

IF:4.362

CNSA编号:CNP0001553

41

Zhao H, Nickle D C, Zeng Z, et al. Global Landscape of Clostridioides Difficile Phylogeography, Antibiotic Susceptibility, and Toxin Polymorphisms by Post-Hoc Whole-Genome Sequencing from the MODIFY I/II Studies[J]. Infectious diseases and therapy, 2021: 1-18.

IF:4.307

CNSA编号:CNP0000099

42

Zhu J, Ren H, Zhong H, et al. An expanded gene catalog of mouse gut metagenomes[J]. Msphere, 2021, 6(1).

IF:4.282

CNSA编号:CNP0000619

43

Ouyang W, Dong G, Zhao W, et al. Restoration of β-globin expression with optimally designed lentiviral vector for β-thalassemia treatment in Chinese patients[J]. Human Gene Therapy, 2021.

IF:4.273

CNSA编号:CNP0001136

44

Zou Y, Xue W, Lin X, et al. Taxonomic description and genome sequence of Christensenella intestinihominis sp. nov., a novel cholesterol-lowering bacterium isolated from human gut[J]. Frontiers in Microbiology, 2021, 12: 182.

IF:4.235  

CNSA编号:CNPhis0003415

45

Bian S, Wenhong Z, Li Q, et al. Genetic structure, function and evolution of capsule biosynthesis loci in Vibrio parahaemolyticus[J]. Frontiers in Microbiology, 2020.

IF:4.235  

CNSA编号:CNP0000343

46

Wang Y, Liao S, Gai Y, et al. Metagenomic Analysis Reveals Microbial Community Structure and Metabolic Potential for Nitrogen Acquisition in the Oligotrophic Surface Water of the Indian Ocean[J]. Frontiers in Microbiology, 2021, 12: 229.

IF:4.235  

CNSA编号:CNP0000411

47

Wang S, Liang H, Xu Y, et al. Genome-wide analyses across Viridiplantae reveal the origin and diversification of small RNA pathway-related genes[J]. Communications biology, 2021, 4(1): 1-11.

IF:4.165

CNSA编号:CNP0000746,CNP0000747

48

Huang J, Lin L, Dong Z, et al. A porcine brain-wide RNA editing landscape[J]. Communications Biology, 2021, 4(1): 1-12.

IF:4.165

CNSA编号:CNP0000483,CNP0001045

49

Gao Z, Guo L, Chen M, et al. Characterization of the development dynamics within the linear growth bamboo leaf[J]. Physiologia Plantarum, 2021.

IF:4.148 

CNSA编号:CNP0001484

50

Zhao Q, Ma Z, Wang X, et al. Lipidomic biomarkers of extracellular vesicles for the prediction of preterm birth in the early second trimester[J]. Journal of Proteome Research, 2020, 19(10): 4104-4113.

IF:4.074

CNSA编号:CNP0001076

51

Wang D, Wang Y, Sun W, et al. Population Bottlenecks and Intra-host Evolution during Human-to-Human Transmission of SARS-CoV-2Population Bottlenecks and Intra-host Evolution during Human-to-Human Transmission of SARS-CoV-2[J]. Frontiers in Medicine, 2020.

IF:3.900

CNSA编号:CNP0001111

52

He Y, Yu Y, Li Y, et al. Phenotypic resemblance to neuropsychiatric disorder and altered mRNA profiles in cortex and hippocampus underlying IL15Rα knockout[J]. Frontiers in neuroscience, 2020, 14.

IF:3.707

CNSA编号:CNP0001191

53

Wang J, Mu W, Yang T, et al. Targeted enrichment of novel chloroplast-based probes reveals a large-scale phylogeny of 412 bamboos[J]. BMC plant biology, 2021, 21(1): 1-13.

IF:3.497

CNSA编号:CNP0000502

54

Li J, Zhou Z, Sun H X, et al. Transcriptome Analyses of β-Thalassemia− 28 (A> G) Mutation Using Isogenic Cell Models Generated by CRISPR/Cas9 and Asymmetric Single-Stranded Oligodeoxynucleotides (assODNs)[J]. Frontiers in genetics, 2020, 11.

IF:3.258

CNSA编号:CNP0000981

55

Guo L, Xu M, Wang W, et al. SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme[J]. BMC bioinformatics, 2021, 22(1): 1-16.

IF:3.242

CNSA编号:CNP0000602,CNP0000066

56

Cheng C, Yang Y, Zhu X, et al. Novel compound heterozygous variants in the STIL gene identified in a Chinese family with presentation of foetal microcephaly[J]. European Journal of Medical Genetics, 2020, 63(12): 104091.

IF:2.368 

CNSA编号:CNP0000415

57

Su D, Liang L, Li Z, et al. Genome analysis of two Lactobacillus plantarum strains, LLY-606 and pc-26, for evaluating their potential as probiotics[J]. Journal of microbiology and biotechnology, 2020.

IF:1.992 

CNSA编号:CNP0000375

58

Xing Y, Yang X, Chen H, et al. Impact of storage conditions on peripheral leukocytes transcriptome[J]. Molecular Biology Reports, 2021, 48(2): 1151-1159.

IF:1.402

CNSA编号:CNP0000266

59

Qu S, Zhang Y, Yang X, et al. The Setup and Application of Reference Material in Sequencing-Based Noninvasive Prenatal Testing[J]. Gynecologic and Obstetric Investigation, 2021, 86(1): 123-131.

IF:1.281

CNSA编号:CNP0000983

60

Chen J, Chen Z, Liu S, et al. Revealing an Invasion Risk of Fish Species in Qingdao Underwater World by Environmental DNA Metabarcoding[J]. Journal of Ocean University of China, 2021, 20(1): 124-136.

IF:0.802

CNSA编号:CNP0000391

61

Zhang X, Zhong H, Li Y, et al. Sex-and age-related trajectories of the adult human gut microbiota shared across populations of different ethnicities[J]. Nature Aging, 2021, 1(1): 87-100.

IF:/

CNSA编号:CNP0000381

62

Zhang Y, Chiu T Y, Zhang J T, et al. Systematical Engineering of Synthetic Yeast for Enhanced Production of Lycopene[J]. Bioengineering, 2021, 8(1): 14.

IF:

CNSA编号: CNP0001391

63

Yu J, Li L, Wang S, et al. Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta)[J]. Gigabyte, 2020.

IF:/

CNSA编号:CNP0000847

64

Sun X, Hu Y H, Wang J, et al. Efficient and stable metabarcoding sequencing data using a DNBSEQ-G400 sequencer validated by comprehensive community analyses[J].Gigabyte, 2021.

IF:/

CNSA编号:CNP0000069

65

DING, SHANG LIU, HUANYI CHEN, BIN KANG, RADOJE DRMANAC, YING GU, XUAN DONG, QIANQIAN GAO, Renpeng. Regulation of Specific Cell Clusters in TCR-T Cells Responding to Differential Expression of Tumor PD-L1. Global Journal of Medical Research, [S.l.], aug. 2020. 

IF:/

CNSA编号:CNP0001109

66

Zhang R, Li C, Yu M, et al. Chromosome-level genome assembly of the humpback puffer, Tetraodon palembangensis[J].Gigabyte, 2021.

IF:/

CNSA编号:CNP0001025

67

Shi C, Chen J, Ge Q, et al. Draft Genomes and Comparative Analysis of Seven Mangrove Rhizosphere-Associated Fungi Isolated From Kandelia obovata and Acanthus ilicifolius[J]. Frontiers in Fungal Biology, 2021, 2: 12.

IF:/

CNSA编号:CNP0000910

To be continued

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