Loading required package: pd.hg.u133a.2 Attempting to obtain 'pd.hg.u133a.2' from BioConductor website. Checking to see if your internet connection works... 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")'for details. Replacement repositories: CRAN: https://cran./
Error in download.file(url, destfile, method, mode = "wb", ...) : download from 'https:///packages/3.17/data/annotation/src/contrib/pd.hg.u133a.2_3.12.0.tar.gz' failed 此外: Warning messages: 1: In download.file(url, destfile, method, mode = "wb", ...) : downloaded length 0 != reported length 0 2: In download.file(url, destfile, method, mode = "wb", ...) : URL 'https://mghp.osn./bir190004-bucket01/archive./packages/3.17/data/annotation/src/contrib/pd.hg.u133a.2_3.12.0.tar.gz': status was 'Transferred a partial file' Warning in download.packages(pkgs, destdir = tmpd, available = available, : 下载程序包'pd.hg.u133a.2’时出了问题 载入需要的程辑包：pd.hg.u133a.2 There was a problem during download or installation. Package 'pd.hg.u133a.2' cannot be loaded. Please, try again. Error in oligo::read.celfiles(celFiles) : The annotation package, pd.hg.u133a.2, could not be loaded. 此外: Warning message: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : 不存在叫'pd.hg.u133a.2’这个名字的程辑包
载入需要的程辑包：pd.hg.u133a.2 Attempting to obtain 'pd.hg.u133a.2' from BioConductor website. Checking to see if your internet connection works... 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")'for details. Replacement repositories: CRAN: https://mirrors.tuna./CRAN/ Warning: 无法在貯藏處http://mirrors.tuna./bioconductor//packages/3.17/bioc/src/contrib中读写索引: 无法打开URL'http://mirrors.tuna./bioconductor//packages/3.17/bioc/src/contrib/PACKAGES' Warning: 无法在貯藏處http://mirrors.tuna./bioconductor//packages/3.17/data/annotation/src/contrib中读写索引: 无法打开URL'http://mirrors.tuna./bioconductor//packages/3.17/data/annotation/src/contrib/PACKAGES' Warning: 无法在貯藏處http://mirrors.tuna./bioconductor//packages/3.17/data/experiment/src/contrib中读写索引: 无法打开URL'http://mirrors.tuna./bioconductor//packages/3.17/data/experiment/src/contrib/PACKAGES' Warning: 无法在貯藏處http://mirrors.tuna./bioconductor//packages/3.17/workflows/src/contrib中读写索引: 无法打开URL'http://mirrors.tuna./bioconductor//packages/3.17/workflows/src/contrib/PACKAGES' Package 'pd.hg.u133a.2' was not found in the BioConductor repository. The 'pdInfoBuilder' package can often be used in situations like this. Error in oligo::read.celfiles(celFiles) : The annotation package, pd.hg.u133a.2, could not be loaded.
如果大家打开上面的URL就会发现是；404 Not Found nginx/1.22.1 ，因为清华大学现在开始节省资源了，别说是3.17了，哪怕是3.18都不是主要的直接下载，目前（2024年05月26日 ）能直接下载的 是 3.19，而且需要配合4.4版本的r，而我的电脑还是4.3，所以就很尴尬。我们的马拉松助教团队给大家整理了这个问题：
根据 Bioconductor 的安排，在 5 月 15 日，3.18 及此前版本的相关数据已经被归档，并从其同步来源中被移除。为节约镜像站磁盘空间，清华源等也相应移除了这些文件。如果大家现在使用的R语言是 4.3 ，Bioconductor 版本是 3.18 ，那么使用 BiocManager::install 的时候可能会报错 Warning: unable to access index for repository *** ，cannot open URL ***
* installing *source* package 'pd.hg.u133a.2' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pd.hg.u133a.2)
下载的程序包在 'C:\Users\jimmy\AppData\Local\Temp\RtmpS0j9qK\downloaded_packages’里 载入需要的程辑包：pd.hg.u133a.2 载入需要的程辑包：RSQLite 载入需要的程辑包：DBI Platform design info loaded.
