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toSpace <- content_transformer(function (x , pattern ) gsub(pattern, "", x))docs <- tm_map(docs, toSpace, "/")docs <- tm_map(docs, toSpace, "@")docs <- tm_map(docs, toSpace, "\\|") 阅105 转1 评0 公众公开 21-09-27 21:54 |
gmtinput <- list(name=name,description=description,genes=genes)get_gmt <- function(gmtinput,filename){ output <- file(filename, open="wt") lapply(gmtinput[["name"]],function(name){ outlines = paste0(c(name, gmtinput[["description"]][[name]], gmtinput[["genes"]][[name]])... 阅1250 转20 评0 公众公开 21-09-23 22:03 |
H[[x]])}hsa_ent <- unique(hsa_ent)length(hsa_ent)hsa_ent2symb <- bitr(hsa_ent, fromType = "ENTREZID", toType = "SYMBOL", OrgDb = org.Hs.eg.db)dim(hsa_ent2symb)diff_ent <- setdiff(hsa_ent,hsa_ent2symb$ENTREZID)ent2symb <- toTable(org. 阅296 转0 评0 公众公开 21-09-18 17:15 |
数据库数据 | TCGA数据库33种癌症的miRNA Isoform Expression数据。该数据是我自己下载整理过的数据。数据类型:RData.变量名称:mir_Count;path <- dir("processedTCGAdata/TCGA-miRNA_Isoform_Count/",".RData$", full.names = T)path[1]load(path[1])head(mir_Count)[,1:3]后台回复:TCGA-miRNA-Seq,下载。第03章... 阅64 转1 评0 公众公开 21-08-28 13:27 |
数据库数据 | TCGA数据库33种癌症的transcriptome profiling (RNA-Seq) 数据。后台回复:TCGA-RNASeq,下载。 阅184 转1 评0 公众公开 21-08-23 19:36 |