Introduction
ESTIMATE provides researchers with scores for tumor purity, the
level of stromal cells present, and the infiltration level of
immune cells in tumor tissues based on expression data. This
website is designed to view and download stromal, immune, and
ESTIMATE scores for each sample across all TCGA
(The Cancer Genome Atlas)
tumor types and platforms.
Sample-Centric ESTIMATE Results
Samples can be individually queried by TCGA sample-id here.
The available data include:
-
Stromal score, Immune score and ESTIMATE score for each sample processed.
-
Plot displaying the ESTIMATE score for each sample under
Affymetrix platform against background ESTIMATE scores for
all the samples defined under Affymetrix platform.
View data by Sample
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Disease-Centric ESTIMATE Results
Scores for all the samples within a disease type can be viewed and
downloaded by selecting the disease. The available data include:
-
Stromal score, Immune score and ESTIMATE score for all the
samples within a disease type.
-
Histogram displaying stromal, immune and ESTIMATE scores for
the selected disease type.
View data by Disease
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Summary of Data
Summary of cancer type expression data available
across different platforms
(December 2015)
Tumor type |
Affymetrix HT_HG-U133A |
Agilent G4502A |
RNA-seq |
RNA-seqV2 |
Totals |
1001 |
1639 |
1515 |
8962 |
Adrenocortical carcinoma |
-
|
-
|
-
|
79
|
Bladder urothelial carcinoma |
-
|
-
|
-
|
408
|
Breast invasive carcinoma |
-
|
488
|
723
|
1100
|
Cervical cancer |
-
|
-
|
-
|
306
|
Colorectal adenocarcinoma |
-
|
218
|
81
|
263
|
Esophageal carcinoma |
-
|
-
|
-
|
185
|
Glioblastoma multiforme |
417
|
319
|
-
|
166
|
Head and neck squamous cell carcinoma |
-
|
-
|
-
|
522
|
Kidney chromophobe renal cell carcinoma |
-
|
-
|
-
|
66
|
Kidney renal clear cell carcinoma |
-
|
42
|
329
|
534
|
Kidney renal papillary cell carcinoma |
-
|
-
|
-
|
291
|
Acute myeloid leukemia |
-
|
-
|
-
|
173
|
Liver hepatocellular carcinoma |
-
|
-
|
-
|
373
|
Brain Lower grade glioma |
-
|
-
|
-
|
530
|
Lung adenocarcinoma |
-
|
-
|
-
|
517
|
Lung squamous cell carcinoma |
115 |
130
|
129
|
501
|
Ovarian serous cystadenocarcinoma |
469
|
442
|
-
|
265
|
Pancreatic ductal adenocarcinoma |
-
|
-
|
-
|
179
|
Pheochromocytoma & Paraganglioma |
-
|
-
|
-
|
184
|
Prostate adenocarcinoma |
-
|
-
|
-
|
498
|
Skin cutaneous melanoma |
-
|
-
|
-
|
471
|
Stomach adenocarcinoma |
-
|
-
|
-
|
415
|
Thyroid papillary carcinoma |
-
|
-
|
-
|
509
|
Uterine corpus endometrial carcinoma |
-
|
-
|
253
|
370
|
Uterine carcinosarcoma |
-
|
-
|
-
|
57
|
*For more details, please contact
Verhaak Lab
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