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Overlapping NetworksOverlapping Networks.To display the number of common molecules between two overlapping networks, click on the Show # of Common Molecules button. You can hide the display of common molecules between networks by clicking on the Hide Common Molecules button.Overlapping Networks Tools。Graph navigatio... 阅65 转0 评0 公众公开 10-08-19 02:12 |
Merged NetworksMerging Networks.From the Overlapping Networks page, select more than one network that you wish to merge. (Hold down the CTRL key while clicking with the mouse, or click and drag to select the networks.) Then click the Merge Networks icon .Note: If you want to add the molecules from a two networks to a... 阅37 转0 评0 公众公开 10-08-19 02:11 |
Pathway and Network Explorer ToolbarPathway and Network Explorer Toolbar.The Pathway and Network Explorer toolbar, used to view analysis networks, My Pathways and Neighborhood Explorer, provides several key functions for examining network diagrams.Once Network Explorer is launched, click the Subcellular Layout button ... 阅96 转0 评0 公众公开 10-08-19 02:11 |
Network ExplorerNetwork Explorer。Double clicking on a molecule will display the Molecule Summary View.Navigating Network Explorer。This launches Network Explorer, and you will see a schematic diagram of the network you have selected to view, as shown below.When viewing multiple networks you can use the tabs at the to... 阅65 转0 评0 公众公开 10-08-19 02:10 |
IPA Network GenerationIPA Network Generation.If you set a cutoff value in the Create Analysis page, IPA compares the expression values of your molecules to it to identify the Network Eligible molecules. molecule expression values are also used along with specific connectivity to prioritize addition of molecules that a... 阅479 转0 评0 公众公开 10-08-19 02:09 |
Molecules ViewMolecules View.Name: The Ingenuity preferred name for genes is usually the official symbol for genes listed in Entrez Gene. Names in bold correspond to Network Eligible molecules. Non-bolded molecules are non-Network Eligible molecules that were incorporated into the network. Clicking on a molecule wi... 阅38 转0 评0 公众公开 10-08-19 02:08 |
and Physiological System Development and Function. Under each high-level category, the top functions are listed along with their significance and number of associated genes. Clicking on a top function open the functions bar chart. Below the functions bar chart you will be able to see the specific functions, associa... 阅61 转0 评0 公众公开 10-08-19 02:08 |
Reviewing Mapped IdentifiersReviewing Mapped Identifiers.Mapped IDs are identifiers that were successfully mapped to a molecule in the Ingenuity Knowledge Base. Duplicate identifiers are mapped to a single molecule.Network Eligible Molecules are the molecules that are eligible for network generation. In order for a ... 阅134 转0 评0 公众公开 10-08-19 02:07 |
If a dataset contains duplicate identifiers for the same molecule, the identifier with the highest Expression Value (lowest when the Expression Value is a p-value), by default, is used in the analysis.Select the Expression Value type and the preferred value (maximum, average, median or minimum) to be used in the analy... 阅446 转1 评0 公众公开 10-08-19 02:07 |
Therefore, if all your input molecules are interesting and you wish to consider all of them as Functional Analysis Molecules, you should select the Ingenuity Knowledge Base as your reference set. If you select your dataset file as the reference set in this case (where either no expression values are assigned to genes... 阅253 转1 评0 公众公开 10-08-19 02:06 |
